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Bugfix to WhatsHapStep Release Branching #3327: Commit 00505ae pushed by bbimber
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Expand the workaround for birth_condition Release Branching #3326: Commit bb4a7bf pushed by bbimber
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Update gitignore Release Branching #3325: Commit 393d7f8 pushed by bbimber
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Try Apache-CLI to parse cluster commands Release Branching #3324: Commit 0bdc433 pushed by bbimber
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Revert switch to LabKeyProcessBuilder Release Branching #3323: Commit 86fa3d7 pushed by bbimber
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Fix security issues flagged by Claude (#418) Release Branching #3322: Commit e5e2350 pushed by bbimber
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Declare the primary genome in pipeline jobs rather than infer it (#417) Release Branching #3321: Commit 9be9d9a pushed by bbimber
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Bump dompurify in /jbrowse in the npm_and_yarn group across 1 directo… Release Branching #3320: Commit 02ff1ba pushed by bbimber
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Limit ProcessSingleCellHandler to just Loupe Files Release Branching #3319: Commit f8af4aa pushed by bbimber
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Bump fast-uri in /jbrowse in the npm_and_yarn group across 1 director… Release Branching #3318: Commit 7291ad1 pushed by bbimber
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Upgrade to @labkey/build 10.x (#408) Release Branching #3317: Commit c4887d0 pushed by bbimber
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Error checking in maintenance tasks Release Branching #3316: Commit b198024 pushed by bbimber
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Error checking in maintenance tasks Release Branching #3315: Commit b198024 pushed by bbimber
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Merge pull request #407 from BimberLab/26.7_fb_merge Release Branching #3314: Commit 9fe16d2 pushed by bbimber
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Restore @labkey/build 9.x Release Branching #3313: Commit cde12f1 pushed by bbimber
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PrintReadBackedHaplotypesHandler should supportsSraArchivedData Release Branching #3312: Commit 18a91cf pushed by bbimber
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PrintReadBackedHaplotypesHandler should supportsSraArchivedData Release Branching #3311: Commit 5ba2ef3 pushed by bbimber
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Improve job resume for MergeSeurat Release Branching #3310: Commit 09e4044 pushed by bbimber
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Bugfix to SnpEff indexing Release Branching #3309: Commit 7246134 pushed by bbimber
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Merge pull request #403 from BimberLab/dependabot/npm_and_yarn/jbrows… Release Branching #3308: Commit 3e9b457 pushed by bbimber
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Improve logic for SequenceAnalysisMaintenanceTask and cancellation Release Branching #3307: Commit 4f9d04d pushed by bbimber
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Check whether study exists in study overview Release Branching #3306: Commit e7570d0 pushed by bbimber
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Improve handling of 10x chemistry Release Branching #3305: Commit dc788ef pushed by bbimber
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Improve handling of 10x chemistry Release Branching #3304: Commit dc788ef pushed by bbimber
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Add --memory-mapping for kraken2 Release Branching #3303: Commit a9aec60 pushed by bbimber
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