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SeqAn

SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data.

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  1. seqan3 seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    C++ 463 90

  2. seqan seqan Public

    SeqAn's official repository.

    C++ 502 172

Repositories

Showing 10 of 52 repositories
  • gcb2026 Public

    Workshop GCB 2026

    seqan/gcb2026's past year of commit activity
    C++ 0 1 0 1 Updated Sep 22, 2026
  • dream-stellar Public

    Fast and exact local alignments

    seqan/dream-stellar's past year of commit activity
    C++ 4 BSD-3-Clause 3 5 7 Updated Sep 21, 2026
  • seqan3 Public

    The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

    seqan/seqan3's past year of commit activity
    C++ 463 90 31 3 Updated Sep 21, 2026
  • FPGAlign Public
    seqan/FPGAlign's past year of commit activity
    C++ 0 1 0 1 Updated Sep 21, 2026
  • chopper Public

    A tool for partitioning a set of sequences into similar batches.

    seqan/chopper's past year of commit activity
    C++ 10 BSD-3-Clause 11 6 4 Updated Sep 21, 2026
  • app-template Public template

    This template comes pre-configured with various SeqAn libraries and a basic Continuous Integration setup. It is designed to provide a robust starting point for your projects, while offering the flexibility to customize and adapt to your specific requirements.

    seqan/app-template's past year of commit activity
    CMake 6 9 20 1 Updated Sep 21, 2026
  • needle Public

    A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

    seqan/needle's past year of commit activity
    C++ 16 11 7 3 Updated Sep 21, 2026
  • hibf Public

    HIBF and IBF

    seqan/hibf's past year of commit activity
    C++ 5 3 6 5 Updated Sep 19, 2026
  • sharg-parser Public

    The modern argument parser for c++ tools

    seqan/sharg-parser's past year of commit activity
    C++ 11 9 12 4 Updated Sep 19, 2026
  • raptor Public

    A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.

    seqan/raptor's past year of commit activity
    C++ 55 19 11 3 Updated Sep 19, 2026
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