📝 Add docstrings to feature/lightweight-reviewer - #1908
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📝 Add docstrings to feature/lightweight-reviewer#1908coderabbitai[bot] wants to merge 3 commits into
feature/lightweight-reviewer#1908coderabbitai[bot] wants to merge 3 commits into
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Docstrings generation was requested by @chezhia. * #1907 (comment) The following files were modified: * `monailabel/datastore/local.py` * `monailabel/endpoints/datastore_review.py` * `plugins/slicer/MONAILabelReviewer/MONAILabelReviewer.py` * `plugins/slicer/MONAILabelReviewer/MONAILabelReviewerLib/ImageDataController.py` * `plugins/slicer/MONAILabelReviewer/MONAILabelReviewerLib/MonaiServerREST.py` * `sample-apps/reviewer/app.py` * `sample-apps/reviewer/client.py` * `sample-apps/reviewer/lib/config.py`
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for more information, see https://pre-commit.ci
…ngs/99030ca Signed-off-by: Elanchezhian <chezhipower@gmail.com>
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Pull request overview
This PR adds/updates docstrings across the lightweight reviewer workflow (sample reviewer app, review endpoints, local datastore helpers, and 3D Slicer reviewer plugin) to improve inline documentation and clarify method behavior.
Changes:
- Expanded docstrings in the reviewer sample app and client to describe configuration, behavior, and return values.
- Added docstrings to reviewer FastAPI endpoints/helpers and local datastore helper methods.
- Added docstrings to the 3D Slicer reviewer plugin REST/controller layers for clarity around server URL handling and download operations.
Reviewed changes
Copilot reviewed 8 out of 8 changed files in this pull request and generated 6 comments.
Show a summary per file
| File | Description |
|---|---|
monailabel/datastore/local.py |
Adds docstrings to datastore helper methods related to ID/filename parsing and label reconciliation. |
monailabel/endpoints/datastore_review.py |
Adds docstrings to review helper functions and API endpoints (cases/versions/report). |
plugins/slicer/MONAILabelReviewer/MONAILabelReviewer.py |
Adds docstrings around server selection/normalization and reviewer UI workflow methods. |
plugins/slicer/MONAILabelReviewer/MONAILabelReviewerLib/ImageDataController.py |
Adds docstrings to image/label retrieval and persistence methods. |
plugins/slicer/MONAILabelReviewer/MONAILabelReviewerLib/MonaiServerREST.py |
Adds docstrings to REST client initialization and request helpers. |
sample-apps/reviewer/app.py |
Adds docstrings describing review-only app configuration and no-op inference/training hooks. |
sample-apps/reviewer/client.py |
Adds docstrings for client operations (ping, list, download, update, report). |
sample-apps/reviewer/lib/config.py |
Improves docstrings for reviewer configuration and derived settings export. |
Comments suppressed due to low confidence (2)
monailabel/endpoints/datastore_review.py:247
_render_csvcallssanitize_csv_value(...), but that helper is not defined anywhere in this module anymore, which will raiseNameErrorat runtime when generating CSV reports. This also removes the intended CSV formula-injection protection.
handle = io.StringIO()
writer = csv.writer(handle)
writer.writerow(["image_id", "status", "level", "reviewer", "comment", "last_reviewed", "tag"])
for item in items:
writer.writerow(
sample-apps/reviewer/client.py:174
download_labelinforeturnsNonewhen the request fails, but its return annotation isDict[str, Any]. Update the annotation to reflect the actual behavior.
def download_labelinfo(self, label_id: str) -> Dict[str, Any]:
"""
💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.
| @@ -122,13 +118,13 @@ def list_images(self, offset: int = 0, limit: int = 100, status_filter: Optional | |||
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| def download_image(self, image_id: str) -> bytes: | |||
| logging.info(f"{self.getCurrentTime()}: REST: request dicom image '{download_uri}'") | ||
| return download_uri | ||
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| def requestImage(self, image_id: str) -> requests.models.Response: |
| @@ -81,6 +109,16 @@ def requestImage(self, image_id: str) -> requests.models.Response: | |||
| return response | |||
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| def requestSegmentation(self, image_id: str, tag: str) -> requests.models.Response: | |||
| """ | ||
| return self.monaiServerREST.getDicomDownloadUri(image_id) | ||
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| def requestImage(self, image_id: str) -> requests.models.Response: |
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| Returns: | ||
| bool: `true` if filtering is disabled or the timestamp falls within the range, `false` otherwise. | ||
| """ |
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| image_info = datastore.get_image_info(image_id) or {} | ||
| label_info = _safe_label_info(datastore, image_id, tag) | ||
| labels = datastore.get_labels_by_image_id(image_id) or {} |
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Docstrings generation was requested by @chezhia.
The following files were modified:
monailabel/datastore/local.pymonailabel/endpoints/datastore_review.pyplugins/slicer/MONAILabelReviewer/MONAILabelReviewer.pyplugins/slicer/MONAILabelReviewer/MONAILabelReviewerLib/ImageDataController.pyplugins/slicer/MONAILabelReviewer/MONAILabelReviewerLib/MonaiServerREST.pysample-apps/reviewer/app.pysample-apps/reviewer/client.pysample-apps/reviewer/lib/config.pyThese files were kept as they were
tests/unit/datastore/test_local.pyThese files were ignored
test_reviewer_server.pyThese file types are not supported
README.mdsample-apps/reviewer/README.mdℹ️ Note